Table of Contents

• Cell2clone
  • cell2clone.classify_lightchain_or_trbc
  • cell2clone.compute_sample_celltype_clonality
  • cell2clone.permutation_test
  • cell2clone.plot_chain_skew_violin
  • cell2clone.plot_clone_size_score_violin
  • cell2clone.add_df_class_to_adata_obs
  • cell2clone.subset_top_bottom_clonal_samples
  • cell2clone.leiden_chain_clones_sampleaware
• cell2clone - identifying lymphocyte clonal expansions from a single-cell dataset
  • Classifying single cells based on light chain or constant chain usage
  • Identifying clonal expansions across cell types and samples
  • Assigning single cells to clones
  • Cluster samples based on clonality across cell types