cell2clone.classify_lightchain_or_trbc

cell2clone.classify_lightchain_or_trbc(adata, mode='T', out_prefix=None)

Classify cells by receptor-chain usage.

For T cells, assigns TRBC1 or TRBC2. For B cells, assigns kappa or lambda based on summed expression. Stores per-cell classifications and log-ratio metrics in adata.obs.

Parameters

adataAnnData

Input AnnData object.

mode{“T”, “B”}, default=”T”

Whether to classify T-cell receptor beta chains or B-cell light chains.

out_prefixstr, optional

Prefix for output columns.

Returns

None