cell2clone.plot_clone_size_score_violin

cell2clone.plot_clone_size_score_violin(df_class, res=None, celltype_col='celltype', p_col='frac_kappa', metric='clone_size_score', frac_col='frac_cells_in_sample', order=None, order_by='median', xlim=(0, 1), size_min=2, size_max=20, jitter=0.3, alpha=0.5, dot_color=None, median_color='black', threshold_color='grey', random_state=0, figsize=None, title='sample-level largest clone size', xlabel='Clone size score', annotate_sig=True, q_cutoff=0.05)

Add sample-level clonality metrics to adata.obs.

Metrics are matched using sample and cell-type identifiers and copied into the observation table.

Parameters

adataAnnData

AnnData object to annotate.

df_classpandas.DataFrame

Data frame containing sample-level metrics.

…

Returns

AnnData

Annotated AnnData object.