cell2clone.add_df_class_to_adata_obs

cell2clone.add_df_class_to_adata_obs(adata, df_class, sample_col='sample_id', celltype_col='celltype_B_v2', cols_to_add=None, prefix='')

Add sample-level clonality metrics to adata.obs.

Metrics are matched using sample and cell-type identifiers and copied into the observation table.

Parameters

adataAnnData

AnnData object to annotate.

df_classpandas.DataFrame

Data frame containing sample-level metrics.

…

Returns

AnnData

Annotated AnnData object.