.. Cell2clone documentation master file, created by
   sphinx-quickstart on Wed Jan 28 15:07:08 2026.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Cell2clone
==========

Project home page `here <https://github.com/Teichlab/cell2clone>`_

.. autosummary::
   :toctree:
   
   cell2clone.classify_lightchain_or_trbc
   cell2clone.compute_sample_celltype_clonality
   cell2clone.permutation_test
   cell2clone.plot_chain_skew_violin
   cell2clone.plot_clone_size_score_violin
   cell2clone.add_df_class_to_adata_obs
   cell2clone.subset_top_bottom_clonal_samples
   cell2clone.leiden_chain_clones_sampleaware